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CAZyme Information: MGYG000004275_01819

You are here: Home > Sequence: MGYG000004275_01819

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_C sp000437175
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C sp000437175
CAZyme ID MGYG000004275_01819
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
950 102632.42 4.8518
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004275 2279760 MAG China Asia
Gene Location Start: 285;  End: 3137  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004275_01819.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 263 448 4.3e-58 0.9128205128205128
CBM13 555 697 1.1e-24 0.6861702127659575
CBM13 711 869 3.7e-21 0.7872340425531915
CBM13 652 752 1.4e-16 0.46808510638297873

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.55e-45 174 516 17 340
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 1.25e-21 262 445 30 208
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
smart00656 Amb_all 3.33e-20 260 452 10 190
Amb_all domain.
pfam14200 RicinB_lectin_2 8.92e-20 641 739 1 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 1.16e-16 595 684 5 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 0.0 1 926 1 891
CDM68184.1 5.30e-119 39 614 30 584
AJO19478.1 1.52e-94 34 530 27 489
QEO08224.1 1.52e-94 34 530 27 489
QII50179.1 2.12e-94 34 530 27 489

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 2.79e-12 200 442 14 226
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
4G9M_A 8.64e-06 712 783 10 81
Crystalstructure of the Rhizoctonia solani agglutinin [Rhizoctonia solani],4G9M_B Crystal structure of the Rhizoctonia solani agglutinin [Rhizoctonia solani],4G9N_A Crystal structure of the Rhizoctonia solani agglutinin in complex with N'-acetyl-galactosamine [Rhizoctonia solani],4G9N_B Crystal structure of the Rhizoctonia solani agglutinin in complex with N'-acetyl-galactosamine [Rhizoctonia solani]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34819 4.02e-56 184 518 32 337
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P94449 4.02e-56 184 518 32 337
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
P27027 3.74e-52 187 518 10 304
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 2.22e-45 184 520 7 308
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
B1L969 3.26e-14 200 442 39 251
Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.964339 0.032547 0.001524 0.000101 0.000066 0.001449

TMHMM  Annotations      download full data without filtering help

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