You are browsing environment: HUMAN GUT
CAZyme Information: MGYG000004277_00028
You are here: Home > Sequence: MGYG000004277_00028
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Veillonella sp900545205 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_C; Negativicutes; Veillonellales; Veillonellaceae; Veillonella; Veillonella sp900545205 | |||||||||||
| CAZyme ID | MGYG000004277_00028 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | Pectate lyase | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | Start: 22992; End: 24260 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 142 | 349 | 7.7e-95 | 0.9906103286384976 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 1.58e-66 | 1 | 421 | 1 | 345 | Pectate lyase [Carbohydrate transport and metabolism]. |
| smart00656 | Amb_all | 8.21e-61 | 147 | 349 | 7 | 185 | Amb_all domain. |
| pfam00544 | Pec_lyase_C | 8.62e-43 | 137 | 349 | 18 | 210 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ARG00208.1 | 1.38e-266 | 21 | 422 | 2 | 403 |
| BBM50051.1 | 6.80e-223 | 1 | 419 | 1 | 411 |
| ASQ48484.1 | 2.76e-222 | 1 | 416 | 1 | 408 |
| BBM43035.1 | 2.26e-221 | 1 | 416 | 1 | 408 |
| BBM47745.1 | 9.18e-221 | 1 | 416 | 1 | 408 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1BN8_A | 6.89e-129 | 1 | 421 | 1 | 420 | BacillusSubtilis Pectate Lyase [Bacillus subtilis] |
| 2BSP_A | 1.96e-128 | 1 | 421 | 1 | 420 | ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis] |
| 5AMV_A | 2.24e-127 | 35 | 421 | 6 | 399 | Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168] |
| 2NZM_A | 1.81e-126 | 35 | 421 | 6 | 399 | ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis] |
| 3KRG_A | 4.74e-124 | 35 | 421 | 6 | 399 | ChainA, Pectate lyase [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P39116 | 3.77e-128 | 1 | 421 | 1 | 420 | Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1 |
| P72242 | 1.14e-69 | 42 | 420 | 39 | 379 | Pectate lyase OS=Pseudomonas amygdali pv. lachrymans OX=53707 GN=pelP PE=3 SV=1 |
| Q56806 | 1.19e-68 | 42 | 420 | 36 | 377 | Pectate lyase OS=Xanthomonas campestris pv. malvacearum OX=86040 PE=3 SV=1 |
| Q59671 | 2.56e-68 | 42 | 420 | 40 | 380 | Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1 |
| Q60140 | 1.99e-67 | 42 | 420 | 39 | 379 | Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.330114 | 0.629233 | 0.037522 | 0.001119 | 0.000823 | 0.001167 |
