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CAZyme Information: MGYG000004281_01394

You are here: Home > Sequence: MGYG000004281_01394

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Parabacteroides sp900552465
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides sp900552465
CAZyme ID MGYG000004281_01394
CAZy Family CBM67
CAZyme Description Chitooligosaccharide deacetylase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1099 124807.34 5.9621
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004281 4813571 MAG China Asia
Gene Location Start: 496;  End: 3795  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004281_01394.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH78 277 794 2.6e-149 0.996031746031746
CBM67 62 253 4.4e-38 0.9602272727272727

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17389 Bac_rhamnosid6H 5.50e-81 401 731 1 340
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531 Bac_rhamnosid_N 3.61e-59 97 270 3 172
Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
cd10802 YdjC_TTHB029_like 4.19e-59 842 1079 3 248
Thermus thermophiles TTHB029 and similar proteins. This subfamily is represented by an YdjC-family protein TTHB029 from Thermus thermophilus HB8; it is similar to Escherichia coli YdjC, a hypothetical protein encoded by the celG gene. TTHB029 functions as a homodimer. Each of monomer consists of (beta/alpha)-barrel fold. The molecular function of TTHB029 is unclear.
pfam04794 YdjC 2.91e-31 842 1079 2 184
YdjC-like protein. Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.
pfam05592 Bac_rhamnosid 1.57e-28 279 397 2 102
Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AYB35611.1 0.0 1 832 73 909
AEE54285.1 0.0 1 832 81 906
AHF16684.1 1.77e-290 1 837 82 910
ANH82563.1 1.10e-286 1 837 79 912
AHM62676.1 7.80e-261 1 835 80 931

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6I60_A 6.38e-157 1 835 87 943
Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]
3W5M_A 4.80e-117 1 834 59 1031
CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6GSZ_A 6.38e-94 8 812 58 863
Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]
2E67_A 3.43e-12 896 1058 56 226
Crystalstructure of the hypothetical protein TTHB029 from Thermus thermophilus HB8 [Thermus thermophilus HB8],2E67_B Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8 [Thermus thermophilus HB8],2E67_C Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8 [Thermus thermophilus HB8],2E67_D Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8 [Thermus thermophilus HB8],2E67_E Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8 [Thermus thermophilus HB8],2E67_F Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8 [Thermus thermophilus HB8]
3CIH_A 6.13e-07 270 768 179 672
Crystalstructure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
T2KPL4 1.45e-117 1 791 87 902
Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1
Q82PP4 1.04e-115 1 833 59 1030
Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
T2KNB2 8.91e-103 1 834 90 923
Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
P9WF03 1.89e-89 2 833 88 910
Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
P49306 4.39e-13 842 1000 17 166
Carbohydrate deacetylase OS=Rhizobium meliloti OX=382 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000042 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004281_01394.