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CAZyme Information: MGYG000004314_00214
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Varibaculum timonense | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum timonense | |||||||||||
| CAZyme ID | MGYG000004314_00214 | |||||||||||
| CAZy Family | CBM32 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 18860; End: 26353 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH95 | 1495 | 2300 | 5.2e-238 | 0.9736842105263158 |
| CBM32 | 925 | 1056 | 1.1e-23 | 0.9516129032258065 |
| CBM32 | 780 | 904 | 5e-21 | 0.8951612903225806 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam14498 | Glyco_hyd_65N_2 | 1.18e-63 | 1471 | 1735 | 1 | 233 | Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain. |
| pfam00754 | F5_F8_type_C | 2.10e-21 | 929 | 1056 | 1 | 127 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
| pfam00754 | F5_F8_type_C | 4.50e-17 | 771 | 904 | 1 | 127 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
| cd00057 | FA58C | 1.21e-13 | 938 | 1047 | 22 | 134 | Substituted updates: Jan 31, 2002 |
| cd00057 | FA58C | 1.31e-10 | 768 | 866 | 10 | 100 | Substituted updates: Jan 31, 2002 |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QSY56848.1 | 0.0 | 1160 | 2336 | 52 | 1230 |
| QTB91571.1 | 0.0 | 1160 | 2336 | 52 | 1230 |
| QRI58870.1 | 0.0 | 1159 | 2334 | 275 | 1470 |
| AFL03772.1 | 0.0 | 1159 | 2334 | 275 | 1470 |
| AXM92304.1 | 0.0 | 1159 | 2342 | 275 | 1479 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2EAB_A | 0.0 | 1463 | 2334 | 12 | 895 | Crystalstructure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form) [Bifidobacterium bifidum],2EAB_B Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form) [Bifidobacterium bifidum],2EAC_A Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with deoxyfuconojirimycin [Bifidobacterium bifidum],2EAC_B Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with deoxyfuconojirimycin [Bifidobacterium bifidum] |
| 2EAE_A | 0.0 | 1463 | 2334 | 11 | 894 | ChainA, Alpha-fucosidase [Bifidobacterium bifidum] |
| 2EAD_A | 0.0 | 1463 | 2334 | 12 | 895 | ChainA, Alpha-fucosidase [Bifidobacterium bifidum],2EAD_B Chain B, Alpha-fucosidase [Bifidobacterium bifidum] |
| 2RDY_A | 4.22e-109 | 1502 | 2334 | 18 | 790 | ChainA, BH0842 protein [Halalkalibacterium halodurans C-125],2RDY_B Chain B, BH0842 protein [Halalkalibacterium halodurans C-125] |
| 4UFC_A | 1.61e-106 | 1471 | 2309 | 24 | 758 | Crystalstructure of the GH95 enzyme BACOVA_03438 [Bacteroides ovatus],4UFC_B Crystal structure of the GH95 enzyme BACOVA_03438 [Bacteroides ovatus] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q8L7W8 | 2.47e-94 | 1489 | 2286 | 55 | 806 | Alpha-L-fucosidase 2 OS=Arabidopsis thaliana OX=3702 GN=FUC95A PE=1 SV=1 |
| A2R797 | 2.50e-83 | 1502 | 2302 | 39 | 789 | Probable alpha-fucosidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=afcA PE=3 SV=1 |
| Q5AU81 | 2.06e-60 | 1488 | 2291 | 31 | 796 | Alpha-fucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=afcA PE=1 SV=1 |
| Q2USL3 | 2.16e-50 | 1504 | 2274 | 35 | 696 | Probable alpha-fucosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=afcA PE=3 SV=2 |
| I1S2N3 | 3.26e-14 | 760 | 904 | 45 | 184 | Galactose oxidase OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=GAOA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000262 | 0.999074 | 0.000161 | 0.000188 | 0.000156 | 0.000141 |
