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CAZyme Information: MGYG000004334_01625
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Ruminococcus_E sp002493635 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Acutalibacteraceae; Ruminococcus_E; Ruminococcus_E sp002493635 | |||||||||||
| CAZyme ID | MGYG000004334_01625 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 9114; End: 15413 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| TIGR03696 | Rhs_assc_core | 5.36e-20 | 1820 | 1911 | 1 | 76 | RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain. |
| COG3209 | RhsA | 1.64e-17 | 1203 | 1911 | 31 | 659 | Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]. |
| NF033679 | DNRLRE_dom | 2.26e-17 | 330 | 495 | 4 | 164 | DNRLRE domain. The DNRLRE domain, with a length of about 160 amino acids, appears typically in large, repetitive surface proteins of bacteria and archaea, sometimes repeated several times. It occurs, notably, three times in the C-terminal region of the enzyme disaggregatase from the archaeal species Methanosarcina mazei, each time with the motif DNRLRE, for which the domain is named. Archaeal proteins within this family are described particularly well by the currently more narrowly defined Pfam model, PF06848. Note that the catalytic region of disaggregatase, in the N-terminal portion of the protein, is modeled by a different HMM, PF08480. |
| pfam02018 | CBM_4_9 | 7.75e-05 | 1040 | 1170 | 2 | 119 | Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. |
| COG3209 | RhsA | 6.79e-04 | 652 | 1422 | 41 | 758 | Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ARD64149.1 | 2.17e-188 | 58 | 1918 | 40 | 2190 |
| QNM08600.1 | 3.20e-184 | 183 | 1911 | 334 | 2308 |
| QRT48460.1 | 3.86e-108 | 58 | 1293 | 5 | 1253 |
| QEI31369.1 | 2.70e-101 | 58 | 1249 | 5 | 1192 |
| QHB23864.1 | 2.70e-101 | 58 | 1249 | 5 | 1192 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7PQ5_L | 6.09e-06 | 1206 | 1409 | 680 | 854 | ChainL, Tre23 [Photorhabdus laumondii subsp. laumondii TTO1] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| G4NYJ6 | 8.51e-27 | 1625 | 1911 | 1919 | 2186 | tRNA3(Ser)-specific nuclease WapA OS=Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10) OX=1052585 GN=wapA PE=1 SV=1 |
| Q07833 | 1.64e-25 | 61 | 505 | 73 | 498 | tRNA nuclease WapA OS=Bacillus subtilis (strain 168) OX=224308 GN=wapA PE=1 SV=2 |
| D4G3R4 | 6.33e-25 | 61 | 505 | 86 | 511 | tRNA(Glu)-specific nuclease WapA OS=Bacillus subtilis subsp. natto (strain BEST195) OX=645657 GN=wapA PE=1 SV=2 |
| P16917 | 6.56e-06 | 1794 | 1950 | 1146 | 1294 | Protein RhsB OS=Escherichia coli (strain K12) OX=83333 GN=rhsB PE=3 SV=4 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000307 | 0.998977 | 0.000209 | 0.000162 | 0.000155 | 0.000146 |
