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CAZyme Information: MGYG000004384_01307

You are here: Home > Sequence: MGYG000004384_01307

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus;
CAZyme ID MGYG000004384_01307
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
956 104167.91 4.8739
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004384 2222403 MAG Israel Asia
Gene Location Start: 832;  End: 3702  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.14 3.2.1.-

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 267 448 3.8e-55 0.8923076923076924
CBM13 537 656 1.3e-17 0.5797872340425532

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 6.38e-40 190 520 33 341
Pectate lyase [Carbohydrate transport and metabolism].
pfam14200 RicinB_lectin_2 4.41e-20 560 640 12 89
Ricin-type beta-trefoil lectin domain-like.
smart00656 Amb_all 2.12e-18 263 455 10 190
Amb_all domain.
pfam00544 Pec_lyase_C 1.53e-17 265 448 30 208
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam14200 RicinB_lectin_2 4.30e-17 601 689 5 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 0.0 39 915 34 878
CDM68184.1 6.08e-119 36 618 24 582
AKQ74328.1 6.80e-91 39 521 29 479
VEB20252.1 4.96e-90 39 534 29 493
QII50179.1 4.96e-90 39 534 29 493

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 2.84e-11 203 445 14 226
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 1.07e-55 190 521 35 337
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 1.62e-53 190 521 35 337
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 3.21e-48 190 521 10 304
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 4.96e-42 187 523 7 308
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
B1L969 1.41e-11 203 445 39 251
Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000518 0.998059 0.000838 0.000232 0.000180 0.000148

TMHMM  Annotations      download full data without filtering help

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