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CAZyme Information: MGYG000004429_00291

You are here: Home > Sequence: MGYG000004429_00291

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; CAG-274; ;
CAZyme ID MGYG000004429_00291
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1171 MGYG000004429_19|CGC1 125160.86 4.2989
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004429 2352873 MAG Israel Asia
Gene Location Start: 9837;  End: 13352  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004429_00291.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 245 436 3.9e-33 0.8613861386138614
CBM77 817 895 4.2e-16 0.7378640776699029

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.27e-26 228 525 71 340
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 4.49e-15 255 438 15 190
Amb_all domain.
pfam00544 Pec_lyase_C 5.03e-08 289 434 61 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
cd14256 Dockerin_I 4.58e-06 1098 1161 1 57
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.
pfam00404 Dockerin_1 7.77e-05 1099 1161 1 56
Dockerin type I repeat. The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BBF42492.1 6.29e-136 1 529 1 504
ADU23076.1 1.22e-97 36 529 761 1239
ACR71161.1 2.72e-96 34 918 43 898
CDR31241.1 2.83e-89 34 557 330 838
QEH68115.1 1.03e-73 14 528 14 478

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 1.31e-18 172 439 2 251
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1VBL_A 1.53e-13 255 422 131 312
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
5AMV_A 1.78e-12 257 418 128 302
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
1BN8_A 2.00e-12 257 418 149 323
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2QY1_A 4.44e-12 266 532 73 330
ChainA, Pectate lyase II [Xanthomonas campestris pv. campestris],2QY1_B Chain B, Pectate lyase II [Xanthomonas campestris pv. campestris]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B1B6T1 1.70e-16 257 438 109 276
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
Q65DC2 1.70e-16 257 438 109 276
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
Q8GCB2 1.70e-16 257 438 109 276
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
P0C1C2 6.12e-15 212 444 70 288
Pectate lyase 3 OS=Pectobacterium carotovorum OX=554 GN=pel3 PE=1 SV=1
P0C1C3 6.12e-15 240 444 94 288
Pectate lyase 3 OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pel3 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000313 0.998911 0.000172 0.000250 0.000177 0.000149

TMHMM  Annotations      download full data without filtering help

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