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CAZyme Information: MGYG000004547_00722

You are here: Home > Sequence: MGYG000004547_00722

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; CAG-274; ;
CAZyme ID MGYG000004547_00722
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
877 MGYG000004547_23|CGC2 95943.56 4.9955
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004547 2604006 MAG France Europe
Gene Location Start: 15965;  End: 18598  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004547_00722.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 99 291 2.6e-69 0.9890710382513661

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.19e-08 4 385 2 342
Pectate lyase [Carbohydrate transport and metabolism].
pfam17957 Big_7 2.70e-08 486 551 1 67
Bacterial Ig domain. This entry represents a bacterial ig-like domain that is found in glycosyl hydrolase enzymes.
smart00656 Amb_all 4.22e-04 101 281 3 172
Amb_all domain.
pfam07081 DUF1349 0.002 741 782 108 149
Protein of unknown function (DUF1349). This family consists of several hypothetical bacterial proteins but contains one sequence from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.
cd11303 Dystroglycan_repeat 0.004 543 576 64 98
Cadherin-like repeat domain of alpha dystroglycan. Dystroglycan is a glycoprotein widely distributed in skeletal muscle and other tissues; the pre-protein is cleaved into two subunits (alpha and beta) that form a complex which links the extracellular matrix to the cytoskeleton. Cadherin-like dystroglycan repeats are present in the extracellular alpha-dystroglycan subunit, which binds to the alpha-2-laminin G-domain in the basement membrane as part of the dystrophin-dystroglycan-complex (DGC). DGC has been shown to interact with other etxtracellular matrix components as well, such as perlecan and m-agrin, suggesting that the complex may play various different roles depending on the extracellular ligand.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNF31079.1 2.83e-231 41 810 27 754
QYR21100.1 1.79e-226 40 803 44 831
QGH35978.1 8.02e-224 41 807 38 762
AEI43214.1 3.05e-223 40 815 39 770
AFH63199.1 8.83e-220 38 815 37 770

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q5B297 7.08e-53 44 475 22 411
Probable pectate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyC PE=3 SV=1
Q0CLG7 3.56e-50 44 475 22 414
Probable pectate lyase C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyC PE=3 SV=1
A1DPF0 4.98e-50 42 475 21 415
Probable pectate lyase C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyC PE=3 SV=1
B8NQQ7 1.24e-49 42 475 20 414
Probable pectate lyase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyC PE=3 SV=1
Q2UB83 8.04e-49 42 475 20 414
Probable pectate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000346 0.998752 0.000223 0.000246 0.000214 0.000189

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004547_00722.