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CAZyme Information: MGYG000004608_01595
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; | |||||||||||
| CAZyme ID | MGYG000004608_01595 | |||||||||||
| CAZy Family | CBM32 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 9265; End: 14685 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CBM32 | 119 | 232 | 4.8e-18 | 0.7741935483870968 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00754 | F5_F8_type_C | 5.44e-15 | 110 | 244 | 1 | 127 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
| pfam09479 | Flg_new | 7.38e-13 | 1664 | 1726 | 2 | 65 | Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria. |
| pfam13385 | Laminin_G_3 | 6.73e-09 | 1220 | 1337 | 17 | 150 | Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily. |
| NF033188 | internalin_H | 3.48e-06 | 1643 | 1804 | 395 | 544 | InlH/InlC2 family class 1 internalin. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin H (InlH), or internalin C2, two class 1 (LPXTG-type) internalins that are closely related, one apparently derived from the other through a recombination event. |
| cd00057 | FA58C | 4.41e-06 | 114 | 230 | 17 | 134 | Substituted updates: Jan 31, 2002 |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QCC62414.1 | 0.0 | 248 | 1735 | 18 | 1571 |
| QQA11075.1 | 7.76e-184 | 236 | 1299 | 92 | 1166 |
| BAB80970.1 | 2.85e-183 | 236 | 1299 | 92 | 1166 |
| AOY54034.1 | 2.85e-183 | 236 | 1299 | 92 | 1166 |
| ABG83191.1 | 5.45e-183 | 236 | 1299 | 92 | 1166 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2J7M_A | 2.62e-09 | 106 | 246 | 8 | 147 | Characterizationof a Family 32 CBM [Clostridium perfringens] |
| 2J1A_A | 2.68e-09 | 106 | 246 | 9 | 148 | Structureof CBM32 from Clostridium perfringens beta-N- acetylhexosaminidase GH84C in complex with galactose [Clostridium perfringens ATCC 13124],2J1E_A High Resolution Crystal Structure of CBM32 from a N-acetyl-beta- hexosaminidase in complex with lacNAc [Clostridium perfringens ATCC 13124] |
| 2V5D_A | 3.64e-09 | 65 | 246 | 563 | 735 | Structureof a Family 84 Glycoside Hydrolase and a Family 32 Carbohydrate-Binding Module in Tandem from Clostridium perfringens. [Clostridium perfringens] |
| 7PMO_D | 1.01e-07 | 1460 | 1631 | 70 | 269 | ChainD, Ruminococcus gnavus endogalactosidase GH98 [[Ruminococcus] gnavus ATCC 29149],7PMO_G Chain G, Ruminococcus gnavus endogalactosidase GH98 [[Ruminococcus] gnavus ATCC 29149] |
| 7Q1W_A | 1.01e-07 | 1460 | 1631 | 69 | 268 | ChainA, Ruminococcus gnavus end galactosidase GH98 [[Ruminococcus] gnavus ATCC 29149] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P0DJ97 | 2.15e-08 | 1633 | 1727 | 633 | 729 | Putative Gly-rich membrane protein Bcell_0380 OS=Evansella cellulosilytica (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) OX=649639 GN=Bcell_0380 PE=4 SV=1 |
| Q0TR53 | 2.28e-08 | 65 | 246 | 593 | 765 | O-GlcNAcase NagJ OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) OX=195103 GN=nagJ PE=1 SV=1 |
| Q8XL08 | 2.28e-08 | 65 | 246 | 593 | 765 | O-GlcNAcase NagJ OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=nagJ PE=1 SV=1 |
| P0DJ98 | 4.25e-08 | 1639 | 1727 | 64 | 149 | Putative membrane protein Bcell_0381 OS=Evansella cellulosilytica (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) OX=649639 GN=Bcell_0381 PE=4 SV=1 |
| Q723K6 | 6.23e-06 | 1636 | 1729 | 610 | 705 | Internalin A OS=Listeria monocytogenes serotype 4b (strain F2365) OX=265669 GN=inlA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000332 | 0.998857 | 0.000195 | 0.000222 | 0.000205 | 0.000180 |
