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CAZyme Information: MGYG000004725_00753

You are here: Home > Sequence: MGYG000004725_00753

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA9475 sp900554075
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; UBA9475; UBA9475 sp900554075
CAZyme ID MGYG000004725_00753
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
850 92373.05 4.8948
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004725 2206830 MAG Denmark Europe
Gene Location Start: 9178;  End: 11730  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004725_00753.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 233 425 3.3e-44 0.8316831683168316

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 5.88e-37 147 516 28 340
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 6.79e-27 239 426 16 188
Amb_all domain.
pfam00544 Pec_lyase_C 1.87e-15 273 424 61 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADU23076.1 6.94e-134 29 518 759 1237
ACR71161.1 1.81e-125 33 526 47 570
BBF42492.1 9.56e-107 2 519 6 503
CDR31241.1 6.21e-92 82 526 381 815
QEH68115.1 3.59e-63 23 527 31 487

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 1.25e-17 194 424 43 246
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
5AMV_A 2.84e-16 224 422 112 323
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
1BN8_A 3.34e-16 224 422 133 344
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 7.89e-16 224 422 133 344
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 1.60e-15 224 422 112 323
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 1.83e-15 224 422 133 344
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
P04959 2.31e-12 306 524 161 369
Pectate lyase B OS=Dickeya chrysanthemi OX=556 GN=pelB PE=3 SV=1
B1L969 5.08e-12 239 414 93 245
Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1
Q9WYR4 6.88e-12 239 414 95 247
Pectate trisaccharide-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=pelA PE=1 SV=1
Q56806 3.09e-11 152 424 33 308
Pectate lyase OS=Xanthomonas campestris pv. malvacearum OX=86040 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000241 0.999090 0.000179 0.000178 0.000157 0.000145

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004725_00753.