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CAZyme Information: MGYG000004725_00754

You are here: Home > Sequence: MGYG000004725_00754

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA9475 sp900554075
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; UBA9475; UBA9475 sp900554075
CAZyme ID MGYG000004725_00754
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
627 67644.29 4.6482
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004725 2206830 MAG Denmark Europe
Gene Location Start: 11826;  End: 13709  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004725_00754.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 234 445 1.2e-44 0.9257425742574258

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 4.28e-33 219 444 58 275
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 2.61e-30 257 444 16 188
Amb_all domain.
pfam00544 Pec_lyase_C 8.86e-21 231 442 5 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam13620 CarboxypepD_reg 0.002 33 123 8 71
Carboxypeptidase regulatory-like domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADU23076.1 3.71e-144 39 537 759 1239
ACR71161.1 1.63e-134 3 528 6 552
BBF42492.1 2.13e-100 43 537 42 504
CDR31241.1 1.02e-83 92 536 381 808
QEH68115.1 1.34e-57 44 540 43 482

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 3.04e-19 256 444 78 248
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
5AMV_A 2.25e-18 227 468 100 346
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
1BN8_A 2.68e-18 227 468 121 367
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 6.39e-18 227 468 121 367
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 1.29e-17 227 468 100 346
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1C1 3.83e-19 217 458 72 293
Pectate lyase 2 OS=Pectobacterium carotovorum OX=554 GN=pel2 PE=3 SV=1
Q6CZT3 7.23e-18 217 458 72 293
Pectate lyase 2 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=pel2 PE=1 SV=1
P39116 1.47e-17 227 468 121 367
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
P0C1C0 4.19e-17 217 450 72 285
Pectate lyase 1 OS=Pectobacterium carotovorum OX=554 GN=pel1 PE=1 SV=1
Q8GCB2 7.07e-17 173 450 58 279
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000484 0.998611 0.000222 0.000300 0.000189 0.000180

TMHMM  Annotations      download full data without filtering help

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