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CAZyme Information: MGYG000004725_01193

You are here: Home > Sequence: MGYG000004725_01193

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA9475 sp900554075
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; UBA9475; UBA9475 sp900554075
CAZyme ID MGYG000004725_01193
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
862 MGYG000004725_10|CGC1 93113.57 4.7527
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004725 2206830 MAG Denmark Europe
Gene Location Start: 20989;  End: 23577  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004725_01193.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 223 409 1.4e-39 0.8514851485148515

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.97e-48 86 539 1 340
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 6.23e-32 226 410 11 190
Amb_all domain.
pfam00544 Pec_lyase_C 1.13e-21 194 406 1 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AUO19538.1 1.22e-266 13 786 11 758
AYN05640.1 3.89e-135 29 579 19 550
AGF55382.1 3.22e-134 30 584 83 599
AQR94278.1 4.53e-134 30 579 83 594
ABX41986.1 1.88e-133 3 598 7 567

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 4.20e-24 134 419 2 259
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1AIR_A 2.59e-15 189 470 46 315
ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
1PCL_A 3.54e-15 202 406 51 276
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
2EWE_A 6.21e-15 189 470 46 315
ChainA, Pectate lyase C [Dickeya chrysanthemi]
1VBL_A 1.82e-14 231 406 132 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8GCB2 1.33e-22 145 414 41 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
Q65DC2 1.33e-22 145 414 41 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
B1B6T1 1.33e-22 145 414 41 280
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
P04959 1.48e-19 189 420 67 293
Pectate lyase B OS=Dickeya chrysanthemi OX=556 GN=pelB PE=3 SV=1
P0C1C2 6.89e-17 189 420 67 292
Pectate lyase 3 OS=Pectobacterium carotovorum OX=554 GN=pel3 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000278 0.999039 0.000177 0.000179 0.000158 0.000143

TMHMM  Annotations      download full data without filtering help

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