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CAZyme Information: MGYG000004838_01028

You are here: Home > Sequence: MGYG000004838_01028

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species RUG023 sp900315435
Lineage Bacteria; Spirochaetota; Spirochaetia; Sphaerochaetales; Sphaerochaetaceae; RUG023; RUG023 sp900315435
CAZyme ID MGYG000004838_01028
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
264 28629.36 4.8397
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004838 1853088 MAG China Asia
Gene Location Start: 49;  End: 843  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004838_01028.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 1 228 2.5e-56 0.6030769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 4.01e-45 1 208 256 468
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 4.29e-24 2 154 104 250
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 4.86e-18 17 159 226 360
polygalacturonase ADPG
PLN02793 PLN02793 1.21e-17 21 159 215 344
Probable polygalacturonase
PLN03003 PLN03003 1.33e-16 3 161 158 308
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEV29746.1 3.83e-91 1 256 180 434
ADY14832.1 2.97e-90 1 256 180 434
AEE17954.1 3.75e-90 1 256 180 437
AEC01281.1 2.25e-88 1 256 180 434
QTQ10970.1 2.21e-83 3 258 194 454

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 7.03e-24 3 136 210 343
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
1BHE_A 1.48e-13 3 154 171 314
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
1HG8_A 4.22e-06 16 144 142 267
Endopolygalacturonasefrom the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 8.89e-39 1 254 40 288
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 7.43e-27 3 238 219 449
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q9FY19 4.34e-16 1 222 202 407
Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1
Q7M1E7 8.01e-16 1 222 201 406
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1
Q9LW07 3.27e-15 3 160 158 307
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000055 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004838_01028.