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CAZyme Information: MGYG000004887_01468
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UBA1417 sp002305575 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Acutalibacteraceae; UBA1417; UBA1417 sp002305575 | |||||||||||
| CAZyme ID | MGYG000004887_01468 | |||||||||||
| CAZy Family | GH39 | |||||||||||
| CAZyme Description | HTH-type transcriptional activator RhaS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 30271; End: 32649 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH39 | 305 | 739 | 5.7e-57 | 0.9791183294663574 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG2207 | AraC | 1.39e-32 | 162 | 268 | 21 | 127 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
| pfam01229 | Glyco_hydro_39 | 3.42e-32 | 300 | 791 | 7 | 489 | Glycosyl hydrolases family 39. |
| smart00342 | HTH_ARAC | 2.88e-30 | 177 | 260 | 1 | 84 | helix_turn_helix, arabinose operon control protein. |
| pfam12833 | HTH_18 | 3.90e-27 | 183 | 262 | 1 | 81 | Helix-turn-helix domain. |
| COG4977 | GlxA | 1.27e-24 | 157 | 264 | 216 | 323 | Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QQQ92191.1 | 5.05e-218 | 1 | 792 | 1 | 799 |
| QJU15301.1 | 5.05e-218 | 1 | 792 | 1 | 799 |
| ASU27451.1 | 5.74e-218 | 1 | 792 | 5 | 803 |
| ANU74646.2 | 5.74e-218 | 1 | 792 | 5 | 803 |
| BAK46391.1 | 1.16e-178 | 17 | 790 | 14 | 798 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6UQJ_A | 5.42e-35 | 303 | 787 | 23 | 501 | Crystalstructure of the GH39 enzyme from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306] |
| 6YYH_A | 4.86e-22 | 311 | 789 | 41 | 502 | Crystalstructure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYH_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYI_A Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12],6YYI_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12] |
| 3OOU_A | 6.26e-16 | 163 | 261 | 7 | 105 | Thestructure of a protein with unkown function from Listeria innocua [Listeria innocua] |
| 6SWI_A | 4.68e-11 | 168 | 261 | 12 | 106 | TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus] |
| 3LSG_A | 7.49e-11 | 170 | 260 | 11 | 102 | Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P23552 | 2.52e-27 | 309 | 679 | 22 | 397 | Beta-xylosidase OS=Caldicellulosiruptor saccharolyticus OX=44001 GN=xynB PE=3 SV=1 |
| Q936F1 | 2.50e-18 | 45 | 776 | 42 | 728 | Uncharacterized HTH-type transcriptional regulator OS=Staphylococcus aureus OX=1280 PE=4 SV=2 |
| Q6GKK1 | 1.73e-17 | 45 | 776 | 42 | 728 | Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1 |
| Q99XB1 | 5.23e-17 | 45 | 776 | 42 | 728 | Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1 |
| Q7A882 | 5.23e-17 | 45 | 776 | 42 | 728 | Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000051 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
