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CAZyme Information: MGYG000004891_00858

You are here: Home > Sequence: MGYG000004891_00858

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; KM106-2;
CAZyme ID MGYG000004891_00858
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
506 MGYG000004891_8|CGC2 56888.73 5.0251
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004891 3652874 MAG China Asia
Gene Location Start: 49494;  End: 51014  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004891_00858.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 106 464 5.3e-76 0.92

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.02e-88 1 501 1 525
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02218 PLN02218 9.79e-30 62 441 51 390
polygalacturonase ADPG
PLN02793 PLN02793 1.34e-29 82 398 53 342
Probable polygalacturonase
pfam00295 Glyco_hydro_28 6.52e-29 172 385 41 239
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02188 PLN02188 6.04e-28 81 461 36 376
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL11994.1 1.31e-256 1 502 1 503
VCV21973.1 2.63e-256 1 502 1 503
CBL09361.1 2.63e-256 1 502 1 503
QNM03367.1 1.70e-240 1 502 1 502
SET55359.1 1.13e-233 1 502 1 501

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 3.30e-43 82 432 28 384
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 3.60e-31 82 380 45 355
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 2.93e-24 98 457 26 359
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
2UVE_A 6.41e-24 48 409 117 514
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
4MR0_A 6.85e-09 44 243 84 264
Crystalstructure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6],4MR0_B Crystal structure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 2.24e-55 223 446 23 247
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 3.03e-44 81 482 62 455
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P48978 1.17e-30 18 433 46 412
Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1
Q8RY29 1.83e-29 62 441 51 390
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2
P43212 3.43e-26 82 438 59 379
Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000063 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004891_00858.