Species | ||||||||||||
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Lineage | Bacteria; Firmicutes_C; Negativicutes; Veillonellales; Veillonellaceae; Veillonella; | |||||||||||
CAZyme ID | MGYG000004894_00539 | |||||||||||
CAZy Family | GH84 | |||||||||||
CAZyme Description | Hyaluronoglucosaminidase | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 327; End: 3365 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH84 | 187 | 489 | 7.7e-99 | 0.9898305084745763 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
pfam07555 | NAGidase | 2.87e-117 | 187 | 489 | 1 | 293 | beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity. |
pfam02838 | Glyco_hydro_20b | 4.20e-25 | 44 | 180 | 2 | 123 | Glycosyl hydrolase family 20, domain 2. This domain has a zincin-like fold. |
cd01347 | ligand_gated_channel | 5.54e-07 | 835 | 987 | 461 | 600 | TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore. |
NF038079 | TonB_sider_MxcH | 5.62e-05 | 879 | 971 | 662 | 752 | TonB-dependent siderophore myxochelin receptor MxcH. |
pfam00754 | F5_F8_type_C | 1.13e-04 | 663 | 780 | 7 | 124 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
BCL58377.1 | 0.0 | 11 | 872 | 2 | 870 |
QMW73896.1 | 0.0 | 8 | 839 | 16 | 853 |
QQY28346.1 | 0.0 | 8 | 839 | 16 | 853 |
QQV04685.1 | 0.0 | 8 | 839 | 16 | 853 |
QPS12837.1 | 0.0 | 8 | 839 | 16 | 853 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
6PV4_A | 1.65e-232 | 44 | 650 | 32 | 653 | Structureof CpGH84A [Clostridium perfringens ATCC 13124],6PV4_B Structure of CpGH84A [Clostridium perfringens ATCC 13124],6PV4_C Structure of CpGH84A [Clostridium perfringens ATCC 13124],6PV4_D Structure of CpGH84A [Clostridium perfringens ATCC 13124] |
6PWI_A | 3.25e-112 | 44 | 643 | 34 | 626 | Structureof CpGH84D [Clostridium perfringens ATCC 13124],6PWI_B Structure of CpGH84D [Clostridium perfringens ATCC 13124] |
2CBI_A | 3.68e-49 | 48 | 454 | 18 | 421 | Structureof the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase [Clostridium perfringens],2CBI_B Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase [Clostridium perfringens],2CBJ_A Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase in complex with PUGNAc [Clostridium perfringens],2CBJ_B Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase in complex with PUGNAc [Clostridium perfringens],2V5C_A Family 84 glycoside hydrolase from Clostridium perfringens, 2.1 Angstrom structure [Clostridium perfringens],2V5C_B Family 84 glycoside hydrolase from Clostridium perfringens, 2.1 Angstrom structure [Clostridium perfringens],2VUR_A Chemical dissection of the link between Streptozotocin, O-GlcNAc and pancreatic cell death [Clostridium perfringens],2VUR_B Chemical dissection of the link between Streptozotocin, O-GlcNAc and pancreatic cell death [Clostridium perfringens],2X0Y_A Screening-based discovery of drug-like O-GlcNAcase inhibitor scaffolds [Clostridium perfringens],2X0Y_B Screening-based discovery of drug-like O-GlcNAcase inhibitor scaffolds [Clostridium perfringens] |
2V5D_A | 4.20e-49 | 48 | 774 | 18 | 719 | Structureof a Family 84 Glycoside Hydrolase and a Family 32 Carbohydrate-Binding Module in Tandem from Clostridium perfringens. [Clostridium perfringens] |
5OXD_A | 4.65e-49 | 48 | 454 | 20 | 423 | Complexof a C. perfringens O-GlcNAcase with a fragment hit [Clostridium perfringens] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
P26831 | 1.62e-282 | 15 | 821 | 6 | 833 | Hyaluronoglucosaminidase OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=nagH PE=1 SV=2 |
Q8XL08 | 2.56e-49 | 15 | 774 | 7 | 749 | O-GlcNAcase NagJ OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=nagJ PE=1 SV=1 |
Q0TR53 | 2.48e-48 | 15 | 774 | 7 | 749 | O-GlcNAcase NagJ OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) OX=195103 GN=nagJ PE=1 SV=1 |
Q89ZI2 | 1.47e-39 | 79 | 584 | 53 | 538 | O-GlcNAcase BT_4395 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=BT_4395 PE=1 SV=1 |
O60502 | 1.01e-19 | 188 | 444 | 63 | 325 | Protein O-GlcNAcase OS=Homo sapiens OX=9606 GN=OGA PE=1 SV=2 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.002752 | 0.948041 | 0.047781 | 0.000660 | 0.000396 | 0.000333 |
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